Dcode.org: Tools Developed by the Research Group of Ivan Ovcharenko at the National Library of Medicine

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InstructionsExample: human-rat-fugu and human-rat GATA3 alignmentDescription

zPicture is a dynamic alignment and visualization tool that is based on blastz alignment program utilized by PipMaker. zPicture alignments can be automatically submitted to rVista 2.0 to identify conserved transcription factor binding sites.


multi-zPicture: multiple sequence alignment tool
SEQUENCE 1
Upload sequence and gene annotation from
UCSC Genome Browser
- or -
Paste sequence
(in FASTA format )
- or -
FASTA file (.fa)
- or -
NCBI accession #
SEQUENCE 2
Upload sequence and gene annotation from
UCSC Genome Browser
- or -
Paste sequence
(in FASTA format )
- or -
FASTA file (.fa)
- or -
NCBI accession #
OPTIONAL :: ANNOTATION 1
Repeats:
Repeats are identified by lower-case letters
Mask repetitive elements
Gene annotation (if any):
    Paste
    File
OPTIONAL :: ANNOTATION 2
Repeats:
Repeats are identified by lower-case letters
Mask repetitive elements
Gene annotation (if any):
    Paste
    File
Select to run "fast" BlastZ on microbial-size genomes
Select to perform "chained" (global) blastz alignment


Return to previously submitted request  


Obtain a copy of zPicture software

NCBI DCODE.org Comparative Genomics Developments