Dcode.org
: Tools Developed by
the Research Group of Ivan Ovcharenko
at the National Library of Medicine
Dcode.org
ECR Browser
Mulan
zPicture
DiRE
SynoR
rVista 2.0
multiTF
SNPDelScore
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21
Instructions
Example:
human-rat-fugu
and
human-rat
GATA3
alignment
Description
zPicture
is a dynamic alignment and visualization tool that is based on
blastz
alignment program utilized by
PipMaker
. zPicture alignments can be automatically submitted to
rVista 2.0
to identify conserved transcription factor binding sites.
Genome Research, 14(3), 472-477, (2004)
multi-zPicture
: multiple sequence alignment tool
SEQUENCE 1
Upload
sequence and gene annotation from
UCSC Genome Browser
- or -
Paste sequence
(in FASTA format
)
- or -
FASTA file (.fa)
- or -
NCBI accession #
SEQUENCE 2
Upload
sequence and gene annotation from
UCSC Genome Browser
- or -
Paste sequence
(in FASTA format
)
- or -
FASTA file (.fa)
- or -
NCBI accession #
OPTIONAL :: ANNOTATION 1
Repeats:
Repeats are identified by lower-case letters
Mask repetitive elements
human
mouse (rat)
cow (pig)
cat (dog)
chicken (birds)
arabidopsis
drosophila
C. elegans
Fugu
no masking
<
Gene annotation (if any):
Paste
File
OPTIONAL :: ANNOTATION 2
Repeats:
Repeats are identified by lower-case letters
Mask repetitive elements
human
mouse (rat)
cow (pig)
cat (dog)
chicken (birds)
arabidopsis
drosophila
C. elegans
Fugu
no masking
Gene annotation (if any):
Paste
File
Select
to run "
fast
" BlastZ on microbial-size genomes
Select
to perform "
chained
" (global) blastz alignment
Return to previously submitted request
Obtain a copy of
zPicture
software
NCBI DCODE.org Comparative Genomics Developments